IL_6S47_142
3D structure
- PDB id
- 6S47 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.28 Å
Loop
- Sequence
- ACGCAGCGAAAUGCGAUACGU*AAUCU
- Length
- 26 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6S47_142 not in the Motif Atlas
- Geometric match to IL_5TBW_144
- Geometric discrepancy: 0.0648
- The information below is about IL_5TBW_144
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_44998.1
- Basepair signature
- cWW-cWW-R-cWW-tSS-R-cWW-cWW-L-cWW-L-L-L-cWW-L-cSS-L-R-L-R
- Number of instances in this motif group
- 2
Unit IDs
6S47|1|AC|A|44
6S47|1|AC|C|45
6S47|1|AC|G|46
6S47|1|AC|C|47
6S47|1|AC|A|48
6S47|1|AC|G|49
6S47|1|AC|C|50
6S47|1|AC|G|51
6S47|1|AC|A|52
6S47|1|AC|A|53
6S47|1|AC|A|54
6S47|1|AC|U|55
6S47|1|AC|G|56
6S47|1|AC|C|57
6S47|1|AC|G|58
6S47|1|AC|A|59
6S47|1|AC|U|60
6S47|1|AC|A|61
6S47|1|AC|C|62
6S47|1|AC|G|63
6S47|1|AC|U|64
*
6S47|1|AC|A|96
6S47|1|AC|A|97
6S47|1|AC|U|98
6S47|1|AC|C|99
6S47|1|AC|U|100
Current chains
- Chain AC
- 5.8S ribosomal RNA
Nearby chains
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain AZ
- 60S ribosomal protein L25
- Chain Aj
- 60S ribosomal protein L35-A
- Chain Al
- 60S ribosomal protein L37-A
- Chain An
- 60S ribosomal protein L39
Coloring options: