IL_6S47_148
3D structure
- PDB id
- 6S47 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.28 Å
Loop
- Sequence
- GAUUAAG*CGC
- Length
- 10 nucleotides
- Bulged bases
- 6S47|1|BA|A|47
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6S47_148 not in the Motif Atlas
- Geometric match to IL_4V88_387
- Geometric discrepancy: 0.077
- The information below is about IL_4V88_387
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_77761.1
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
6S47|1|BA|G|42
6S47|1|BA|A|43
6S47|1|BA|U|44
6S47|1|BA|U|45
6S47|1|BA|A|46
6S47|1|BA|A|47
6S47|1|BA|G|48
*
6S47|1|BA|C|431
6S47|1|BA|G|432
6S47|1|BA|C|433
Current chains
- Chain BA
- 18S rRNA (1707-MER)
Nearby chains
- Chain BY
- 40S ribosomal protein S23-A
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