IL_6S47_151
3D structure
- PDB id
- 6S47 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.28 Å
Loop
- Sequence
- UAUAAG*UGAAA
- Length
- 11 nucleotides
- Bulged bases
- 6S47|1|BA|U|66, 6S47|1|BA|A|68
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6S47_151 not in the Motif Atlas
- Homologous match to IL_4V88_390
- Geometric discrepancy: 0.1383
- The information below is about IL_4V88_390
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_87517.1
- Basepair signature
- cWW-L-R-L-R-tHS-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
6S47|1|BA|U|64
6S47|1|BA|A|65
6S47|1|BA|U|66
6S47|1|BA|A|67
6S47|1|BA|A|68
6S47|1|BA|G|69
*
6S47|1|BA|U|82
6S47|1|BA|G|83
6S47|1|BA|A|84
6S47|1|BA|A|85
6S47|1|BA|A|86
Current chains
- Chain BA
- 18S rRNA (1707-MER)
Nearby chains
- Chain BH
- 40S ribosomal protein S6-A
- Chain BZ
- 40S ribosomal protein S24-A
Coloring options: