IL_6S47_155

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GUAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

6S47|1|BA|U|170

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S47_155 not in the Motif Atlas

Homologous match to IL_4V88_394

Geometric discrepancy: 0.1158

The information below is about IL_4V88_394

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.3

Basepair signature

cWW-cWW-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

6S47|1|BA|G|143
6S47|1|BA|U|144
6S47|1|BA|A|145
6S47|1|BA|U|146
6S47|1|BA|A|147
6S47|1|BA|A|148
6S47|1|BA|C|149
*
6S47|1|BA|G|165
6S47|1|BA|C|166
6S47|1|BA|U|167
6S47|1|BA|A|168
6S47|1|BA|A|169
6S47|1|BA|U|170
6S47|1|BA|A|171
6S47|1|BA|C|172

Current chains

Chain BA

18S rRNA (1707-MER)

Nearby chains

Chain BH

40S ribosomal protein S6-A

Chain BZ

40S ribosomal protein S24-A