IL_6S47_156

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

UGU*AGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S47_156 not in the Motif Atlas

Homologous match to IL_4V88_395

Geometric discrepancy: 0.2274

The information below is about IL_4V88_395

Detailed Annotation

Isolated non-canonical cWW contact

Broad Annotation

No text annotation

Motif group

IL_76004.2

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

18

Unit IDs

6S47|1|BA|U|150
6S47|1|BA|G|151
6S47|1|BA|U|152
*
6S47|1|BA|A|162
6S47|1|BA|G|163
6S47|1|BA|A|164

Current chains

Chain BA

18S rRNA (1707-MER)

Nearby chains

Chain BH

40S ribosomal protein S6-A

Chain BZ

40S ribosomal protein S24-A