IL_6S47_157

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CGAC*GAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S47_157 not in the Motif Atlas

Homologous match to IL_4V88_396

Geometric discrepancy: 0.2749

The information below is about IL_4V88_396

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

6S47|1|BA|C|186
6S47|1|BA|G|187
6S47|1|BA|A|188
6S47|1|BA|C|189
*
6S47|1|BA|G|196
6S47|1|BA|A|197
6S47|1|BA|A|198
6S47|1|BA|G|199

Current chains

Chain BA

18S rRNA (1707-MER)

Nearby chains

Chain BJ

40S ribosomal protein S8-A