IL_6S47_174

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

AGGGCAAG*CU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S47_174 not in the Motif Atlas

Geometric match to IL_4V88_413

Geometric discrepancy: 0.1039

The information below is about IL_4V88_413

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

10

Unit IDs

6S47|1|BA|A|550
6S47|1|BA|G|551
6S47|1|BA|G|552
6S47|1|BA|G|553
6S47|1|BA|C|554
6S47|1|BA|A|555
6S47|1|BA|A|556
6S47|1|BA|G|557
*
6S47|1|BA|C|587
6S47|1|BA|U|588

Current chains

Chain BA

18S rRNA (1707-MER)

Nearby chains

Chain BD

40S ribosomal protein S2

Chain BK

40S ribosomal protein S9-A

Chain Bf

40S ribosomal protein S30-A