IL_6S47_181

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

AC*GAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S47_181 not in the Motif Atlas

Homologous match to IL_4V88_423

Geometric discrepancy: 0.194

The information below is about IL_4V88_423

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_68140.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

19

Unit IDs

6S47|1|BA|A|746
6S47|1|BA|C|747
*
6S47|1|BA|G|802
6S47|1|BA|A|803
6S47|1|BA|A|804
6S47|1|BA|U|805

Current chains

Chain BA

18S rRNA (1707-MER)

Nearby chains

Chain BI

40S ribosomal protein S7-A

Chain BM

40S ribosomal protein S11-A

Chain BX

40S ribosomal protein S22-A

Chain BY

40S ribosomal protein S23-A