IL_6S47_183
3D structure
- PDB id
- 6S47 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.28 Å
Loop
- Sequence
- GAAAAAAUU*AUAUUAGC
- Length
- 17 nucleotides
- Bulged bases
- 6S47|1|BA|U|794
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6S47_183 not in the Motif Atlas
- Homologous match to IL_4V88_425
- Geometric discrepancy: 0.2328
- The information below is about IL_4V88_425
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53064.1
- Basepair signature
- cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
6S47|1|BA|G|751
6S47|1|BA|A|752
6S47|1|BA|A|753
6S47|1|BA|A|754
6S47|1|BA|A|755
6S47|1|BA|A|756
6S47|1|BA|A|757
6S47|1|BA|U|758
6S47|1|BA|U|759
*
6S47|1|BA|A|791
6S47|1|BA|U|792
6S47|1|BA|A|793
6S47|1|BA|U|794
6S47|1|BA|U|795
6S47|1|BA|A|796
6S47|1|BA|G|797
6S47|1|BA|C|798
Current chains
- Chain BA
- 18S rRNA (1707-MER)
Nearby chains
- Chain BF
- 40S ribosomal protein S4-A
- Chain BK
- 40S ribosomal protein S9-A
- Chain BM
- 40S ribosomal protein S11-A
- Chain BX
- 40S ribosomal protein S22-A
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