IL_6S47_193
3D structure
- PDB id
- 6S47 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.28 Å
Loop
- Sequence
- CGA*UCUUUGG
- Length
- 10 nucleotides
- Bulged bases
- 6S47|1|BA|C|1096, 6S47|1|BA|U|1098, 6S47|1|BA|G|1100
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6S47_193 not in the Motif Atlas
- Homologous match to IL_4V88_437
- Geometric discrepancy: 0.1535
- The information below is about IL_4V88_437
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_62898.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
6S47|1|BA|C|1034
6S47|1|BA|G|1035
6S47|1|BA|A|1036
*
6S47|1|BA|U|1095
6S47|1|BA|C|1096
6S47|1|BA|U|1097
6S47|1|BA|U|1098
6S47|1|BA|U|1099
6S47|1|BA|G|1100
6S47|1|BA|G|1101
Current chains
- Chain BA
- 18S rRNA (1707-MER)
Nearby chains
- Chain BD
- 40S ribosomal protein S2
- Chain BM
- 40S ribosomal protein S11-A
- Chain BO
- 40S ribosomal protein S13
- Chain BX
- 40S ribosomal protein S22-A
- Chain BY
- 40S ribosomal protein S23-A
- Chain Bc
- 40S ribosomal protein S27-A
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