IL_6S47_196

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S47_196 not in the Motif Atlas

Homologous match to IL_4V88_440

Geometric discrepancy: 0.0842

The information below is about IL_4V88_440

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

6S47|1|BA|G|1111
6S47|1|BA|G|1112
6S47|1|BA|A|1113
6S47|1|BA|G|1114
6S47|1|BA|U|1115
6S47|1|BA|A|1116
6S47|1|BA|U|1117
6S47|1|BA|G|1118
*
6S47|1|BA|U|1129
6S47|1|BA|G|1130
6S47|1|BA|A|1131
6S47|1|BA|A|1132
6S47|1|BA|A|1133
6S47|1|BA|C|1134

Current chains

Chain BA

18S rRNA (1707-MER)

Nearby chains

Chain Ap

60S ribosomal protein L41-B

Chain BY

40S ribosomal protein S23-A