IL_6S47_209

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

6S47|1|BA|A|1427

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S47_209 not in the Motif Atlas

Homologous match to IL_4V88_452

Geometric discrepancy: 0.2262

The information below is about IL_4V88_452

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

6S47|1|BA|C|1280
6S47|1|BA|G|1281
*
6S47|1|BA|C|1426
6S47|1|BA|A|1427
6S47|1|BA|G|1428

Current chains

Chain BA

18S rRNA (1707-MER)

Nearby chains

Chain BD

40S ribosomal protein S2

Chain BE

40S ribosomal protein S3

Chain BR

40S ribosomal protein S16-A

Chain BV

40S ribosomal protein S20

Chain Be

40S ribosomal protein S29-A