3D structure

PDB id
6S47 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1
Experimental method
ELECTRON MICROSCOPY
Resolution
3.28 Å

Loop

Sequence
AAUA*UUCU
Length
8 nucleotides
Bulged bases
6S47|1|BA|A|1346, 6S47|1|BA|U|1347
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6S47_213 not in the Motif Atlas
Homologous match to IL_4V88_456
Geometric discrepancy: 0.0999
The information below is about IL_4V88_456
Detailed Annotation
Minor groove platform
Broad Annotation
No text annotation
Motif group
IL_76458.1
Basepair signature
cWW-cSH-L-cWW
Number of instances in this motif group
2

Unit IDs

6S47|1|BA|A|1345
6S47|1|BA|A|1346
6S47|1|BA|U|1347
6S47|1|BA|A|1348
*
6S47|1|BA|U|1377
6S47|1|BA|U|1378
6S47|1|BA|C|1379
6S47|1|BA|U|1380

Current chains

Chain BA
18S rRNA (1707-MER)

Nearby chains

Chain BE
40S ribosomal protein S3
Chain BR
40S ribosomal protein S16-A
Chain BV
40S ribosomal protein S20

Coloring options:


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