IL_6S47_213

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

AAUA*UUCU

Length

8 nucleotides

Bulged bases

6S47|1|BA|A|1346, 6S47|1|BA|U|1347

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S47_213 not in the Motif Atlas

Homologous match to IL_4V88_456

Geometric discrepancy: 0.0999

The information below is about IL_4V88_456

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_76458.1

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

2

Unit IDs

6S47|1|BA|A|1345
6S47|1|BA|A|1346
6S47|1|BA|U|1347
6S47|1|BA|A|1348
*
6S47|1|BA|U|1377
6S47|1|BA|U|1378
6S47|1|BA|C|1379
6S47|1|BA|U|1380

Current chains

Chain BA

18S rRNA (1707-MER)

Nearby chains

Chain BE

40S ribosomal protein S3

Chain BR

40S ribosomal protein S16-A

Chain BV

40S ribosomal protein S20