3D structure

PDB id
6S47 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1
Experimental method
ELECTRON MICROSCOPY
Resolution
3.28 Å

Loop

Sequence
GCCAGCGA*UUGUGAAAC
Length
17 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6S47_216 not in the Motif Atlas
Homologous match to IL_4V88_459
Geometric discrepancy: 0.0998
The information below is about IL_4V88_459
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_10447.1
Basepair signature
cWW-tWW-L-R-L-R-L-R-L-tHW-R-L-cWW
Number of instances in this motif group
2

Unit IDs

6S47|1|BA|G|1480
6S47|1|BA|C|1481
6S47|1|BA|C|1482
6S47|1|BA|A|1483
6S47|1|BA|G|1484
6S47|1|BA|C|1485
6S47|1|BA|G|1486
6S47|1|BA|A|1487
*
6S47|1|BA|U|1519
6S47|1|BA|U|1520
6S47|1|BA|G|1521
6S47|1|BA|U|1522
6S47|1|BA|G|1523
6S47|1|BA|A|1524
6S47|1|BA|A|1525
6S47|1|BA|A|1526
6S47|1|BA|C|1527

Current chains

Chain BA
18S rRNA (1707-MER)

Nearby chains

Chain BE
40S ribosomal protein S3
Chain BG
Rps5p
Chain BR
40S ribosomal protein S16-A
Chain BU
40S ribosomal protein S19-A
Chain BV
40S ribosomal protein S20
Chain Ba
40S ribosomal protein S25-A
Chain Be
40S ribosomal protein S29-A

Coloring options:


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