IL_6S47_218

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CUUG*CUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S47_218 not in the Motif Atlas

Homologous match to IL_4V88_461

Geometric discrepancy: 0.1238

The information below is about IL_4V88_461

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_36174.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

6S47|1|BA|C|1495
6S47|1|BA|U|1496
6S47|1|BA|U|1497
6S47|1|BA|G|1498
*
6S47|1|BA|C|1509
6S47|1|BA|U|1510
6S47|1|BA|U|1511
6S47|1|BA|G|1512

Current chains

Chain BA

18S rRNA (1707-MER)

Nearby chains

Chain BU

40S ribosomal protein S19-A