IL_6S47_220

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

6S47|1|BA|C|1637, 6S47|1|BA|A|1766

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S47_220 not in the Motif Atlas

Geometric match to IL_5J7L_058

Geometric discrepancy: 0.1021

The information below is about IL_5J7L_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

6S47|1|BA|C|1636
6S47|1|BA|C|1637
6S47|1|BA|G|1638
*
6S47|1|BA|C|1764
6S47|1|BA|A|1765
6S47|1|BA|A|1766
6S47|1|BA|G|1767

Current chains

Chain BA

18S rRNA (1707-MER)

Nearby chains

Chain Bb

40S ribosomal protein S26-B