IL_6S47_231

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

AGGAU*AGAAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S47_231 not in the Motif Atlas

Geometric match to IL_4V88_474

Geometric discrepancy: 0.1315

The information below is about IL_4V88_474

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

6S47|1|BA|A|1678
6S47|1|BA|G|1679
6S47|1|BA|G|1680
6S47|1|BA|A|1681
6S47|1|BA|U|1682
*
6S47|1|BA|A|1719
6S47|1|BA|G|1720
6S47|1|BA|A|1721
6S47|1|BA|A|1722
6S47|1|BA|U|1723

Current chains

Chain BA

18S rRNA (1707-MER)

Nearby chains

Chain AY

60S ribosomal protein L24-A

Chain BH

40S ribosomal protein S6-A

Chain BJ

40S ribosomal protein S8-A