IL_6S47_234

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CGGUGGCC*GGAAUCCG

Length

16 nucleotides

Bulged bases

6S47|1|AA|G|1236

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S47_234 not in the Motif Atlas

Geometric match to IL_5TBW_055

Geometric discrepancy: 0.1555

The information below is about IL_5TBW_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_12750.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

6S47|1|AA|C|1232
6S47|1|AA|G|1233
6S47|1|AA|G|1234
6S47|1|AA|U|1235
6S47|1|AA|G|1236
6S47|1|AA|G|1237
6S47|1|AA|C|1238
6S47|1|AA|C|1239
*
6S47|1|AA|G|1249
6S47|1|AA|G|1250
6S47|1|AA|A|1251
6S47|1|AA|A|1252
6S47|1|AA|U|1253
6S47|1|AA|C|1254
6S47|1|AA|C|1255
6S47|1|AA|G|1256

Current chains

Chain AA

28S ribosomal RNA

Nearby chains