IL_6S47_235

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

UCAAC*GGA

Length

8 nucleotides

Bulged bases

6S47|1|AA|G|1514

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S47_235 not in the Motif Atlas

Homologous match to IL_8P9A_290

Geometric discrepancy: 0.1083

The information below is about IL_8P9A_290

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.11

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

19

Unit IDs

6S47|1|AA|U|1501
6S47|1|AA|C|1502
6S47|1|AA|A|1503
6S47|1|AA|A|1504
6S47|1|AA|C|1505
*
6S47|1|AA|G|1513
6S47|1|AA|G|1514
6S47|1|AA|A|1515

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AR

60S ribosomal protein L17-A

Chain AT

60S ribosomal protein L19-A

Chain An

60S ribosomal protein L39