IL_6S47_244
3D structure
- PDB id
- 6S47 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.28 Å
Loop
- Sequence
- CGCU*AAAAG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6S47_244 not in the Motif Atlas
- Homologous match to IL_8P9A_455
- Geometric discrepancy: 0.3098
- The information below is about IL_8P9A_455
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_64231.5
- Basepair signature
- cWW-cWW-L-R-L-cWW
- Number of instances in this motif group
- 11
Unit IDs
6S47|1|BA|C|1644
6S47|1|BA|G|1645
6S47|1|BA|C|1646
6S47|1|BA|U|1647
*
6S47|1|BA|A|1753
6S47|1|BA|A|1754
6S47|1|BA|A|1755
6S47|1|BA|A|1756
6S47|1|BA|G|1757
Current chains
- Chain BA
- 18S rRNA (1707-MER)
Nearby chains
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain Ap
- 60S ribosomal protein L41-B
- Chain BY
- 40S ribosomal protein S23-A
- Chain Bf
- 40S ribosomal protein S30-A
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