IL_6SGC_004

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AUC*GU

Length

5 nucleotides

Bulged bases

6SGC|1|54|U|13

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SGC_004 not in the Motif Atlas

Homologous match to IL_8C3A_003

Geometric discrepancy: 0.1232

The information below is about IL_8C3A_003

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

6SGC|1|54|A|12
6SGC|1|54|U|13
6SGC|1|54|C|14
*
6SGC|1|84|G|143
6SGC|1|84|U|144

Current chains

Chain 54

28S ribosomal RNA

Chain 84

5.8S ribosomal RNA

Nearby chains

Chain G2

eL8

Chain N2

Ribosomal protein L15

Chain X2

Ribosomal_L23eN domain-containing protein