IL_6SGC_009

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGAA*UG

Length

6 nucleotides

Bulged bases

6SGC|1|54|G|119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SGC_009 not in the Motif Atlas

Geometric match to IL_1U9S_003

Geometric discrepancy: 0.2525

The information below is about IL_1U9S_003

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_82107.5

Basepair signature

cWW-cWW

Number of instances in this motif group

31

Unit IDs

6SGC|1|54|C|118
6SGC|1|54|G|119
6SGC|1|54|A|120
6SGC|1|54|A|121
*
6SGC|1|54|U|152
6SGC|1|54|G|153

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain G2

eL8

Chain N2

Ribosomal protein L15

Chain h2

uL29