IL_6SGC_010

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AU*AAAUGU

Length

8 nucleotides

Bulged bases

6SGC|1|54|U|150

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SGC_010 not in the Motif Atlas

Homologous match to IL_5TBW_007

Geometric discrepancy: 0.1368

The information below is about IL_5TBW_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_19724.3

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

4

Unit IDs

6SGC|1|54|A|121
6SGC|1|54|U|122
*
6SGC|1|54|A|147
6SGC|1|54|A|148
6SGC|1|54|A|149
6SGC|1|54|U|150
6SGC|1|54|G|151
6SGC|1|54|U|152

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain 84

5.8S ribosomal RNA; 5.8S rRNA

Chain G2

eL8

Chain N2

Ribosomal protein L15