IL_6SGC_018
3D structure
- PDB id
- 6SGC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled on a poly(A) tail
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GAAC*GAGUUCAAGAGGGC
- Length
- 18 nucleotides
- Bulged bases
- 6SGC|1|54|G|409, 6SGC|1|54|G|413
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SGC_018 not in the Motif Atlas
- Homologous match to IL_5TBW_014
- Geometric discrepancy: 0.1258
- The information below is about IL_5TBW_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_60992.7
- Basepair signature
- cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L
- Number of instances in this motif group
- 6
Unit IDs
6SGC|1|54|G|387
6SGC|1|54|A|388
6SGC|1|54|A|389
6SGC|1|54|C|390
*
6SGC|1|54|G|401
6SGC|1|54|A|402
6SGC|1|54|G|403
6SGC|1|54|U|404
6SGC|1|54|U|405
6SGC|1|54|C|406
6SGC|1|54|A|407
6SGC|1|54|A|408
6SGC|1|54|G|409
6SGC|1|54|A|410
6SGC|1|54|G|411
6SGC|1|54|G|412
6SGC|1|54|G|413
6SGC|1|54|C|414
Current chains
- Chain 54
- 28S ribosomal RNA
Nearby chains
- Chain 84
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain P2
- uL22
- Chain Y2
- Ribosomal protein L26
- Chain l2
- eL39
Coloring options: