IL_6SGC_019
3D structure
- PDB id
- 6SGC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled on a poly(A) tail
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GUGAAAC*GUGGAUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SGC_019 not in the Motif Atlas
- Homologous match to IL_5TBW_015
- Geometric discrepancy: 0.0736
- The information below is about IL_5TBW_015
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_66414.7
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
6SGC|1|54|G|415
6SGC|1|54|U|416
6SGC|1|54|G|417
6SGC|1|54|A|418
6SGC|1|54|A|419
6SGC|1|54|A|420
6SGC|1|54|C|421
*
6SGC|1|84|G|13
6SGC|1|84|U|14
6SGC|1|84|G|15
6SGC|1|84|G|16
6SGC|1|84|A|17
6SGC|1|84|U|18
6SGC|1|84|C|19
Current chains
- Chain 54
- 28S ribosomal RNA
- Chain 84
- 5.8S ribosomal RNA
Nearby chains
- Chain C2
- uL4
- Chain P2
- uL22
- Chain e2
- eL32
Coloring options: