IL_6SGC_024

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AUUCAAC*GCGCAUUU

Length

15 nucleotides

Bulged bases

6SGC|1|54|U|687

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SGC|1|54|A|466
6SGC|1|54|U|467
6SGC|1|54|U|468
6SGC|1|54|C|469
6SGC|1|54|A|470
6SGC|1|54|A|471
6SGC|1|54|C|472
*
6SGC|1|54|G|682
6SGC|1|54|C|683
6SGC|1|54|G|684
6SGC|1|54|C|685
6SGC|1|54|A|686
6SGC|1|54|U|687
6SGC|1|54|U|688
6SGC|1|54|U|689

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain E2

60S ribosomal protein L6

Chain r2

Ribosomal_L28e domain-containing protein