IL_6SGC_027

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GG*CGACC

Length

7 nucleotides

Bulged bases

6SGC|1|54|G|666, 6SGC|1|54|A|667, 6SGC|1|54|C|668

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SGC_027 not in the Motif Atlas

Geometric match to IL_1U9S_003

Geometric discrepancy: 0.1851

The information below is about IL_1U9S_003

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_82107.5

Basepair signature

cWW-cWW

Number of instances in this motif group

31

Unit IDs

6SGC|1|54|G|487
6SGC|1|54|G|488
*
6SGC|1|54|C|665
6SGC|1|54|G|666
6SGC|1|54|A|667
6SGC|1|54|C|668
6SGC|1|54|C|669

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain C2

uL4

Chain Q2

eL18

Chain r2

Ribosomal_L28e domain-containing protein