IL_6SGC_031

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UCCC*GUCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SGC_031 not in the Motif Atlas

Geometric match to IL_7KJT_003

Geometric discrepancy: 0.3889

The information below is about IL_7KJT_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

56

Unit IDs

6SGC|1|54|U|520
6SGC|1|54|C|521
6SGC|1|54|C|522
6SGC|1|54|C|523
*
6SGC|1|54|G|638
6SGC|1|54|U|639
6SGC|1|54|C|640
6SGC|1|54|G|641

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain L2

eL13