IL_6SGC_035

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AAGG*CAGCAGCAGCU

Length

15 nucleotides

Bulged bases

6SGC|1|54|A|932, 6SGC|1|54|A|935, 6SGC|1|54|C|936

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SGC|1|54|A|732
6SGC|1|54|A|733
6SGC|1|54|G|734
6SGC|1|54|G|735
*
6SGC|1|54|C|928
6SGC|1|54|A|929
6SGC|1|54|G|930
6SGC|1|54|C|931
6SGC|1|54|A|932
6SGC|1|54|G|933
6SGC|1|54|C|934
6SGC|1|54|A|935
6SGC|1|54|G|935|||A
6SGC|1|54|C|936
6SGC|1|54|U|937

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain C2

uL4

Chain M2

Ribosomal protein L14

Chain S2

eL20