IL_6SGC_044

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUG*CGGG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SGC_044 not in the Motif Atlas

Geometric match to IL_4N0T_004

Geometric discrepancy: 0.3786

The information below is about IL_4N0T_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_99358.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

6SGC|1|54|C|1099
6SGC|1|54|U|1100
6SGC|1|54|G|1168
*
6SGC|1|54|C|1193
6SGC|1|54|G|1194
6SGC|1|54|G|1195
6SGC|1|54|G|1196

Current chains

Chain 54

28S ribosomal RNA

Nearby chains