IL_6SGC_045

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGA*UGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SGC_045 not in the Motif Atlas

Geometric match to IL_3W3S_003

Geometric discrepancy: 0.1475

The information below is about IL_3W3S_003

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.6

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

51

Unit IDs

6SGC|1|54|G|1173
6SGC|1|54|G|1174
6SGC|1|54|A|1175
*
6SGC|1|54|U|1186
6SGC|1|54|G|1187
6SGC|1|54|C|1188

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain D2

60S ribosomal protein L5