IL_6SGC_056

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGUC*GUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SGC_056 not in the Motif Atlas

Homologous match to IL_8C3A_034

Geometric discrepancy: 0.065

The information below is about IL_8C3A_034

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

No text annotation

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

6SGC|1|54|G|1586
6SGC|1|54|G|1587
6SGC|1|54|U|1588
6SGC|1|54|C|1589
*
6SGC|1|54|G|1605
6SGC|1|54|U|1606
6SGC|1|54|C|1607

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain j2

Ribosomal protein L37