IL_6SGC_083

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GAG*CC

Length

5 nucleotides

Bulged bases

6SGC|1|54|A|2300

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SGC_083 not in the Motif Atlas

Homologous match to IL_8C3A_062

Geometric discrepancy: 0.5222

The information below is about IL_8C3A_062

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

6SGC|1|54|G|2299
6SGC|1|54|A|2300
6SGC|1|54|G|2301
*
6SGC|1|54|C|2334
6SGC|1|54|C|2335

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain 84

5.8S ribosomal RNA; 5.8S rRNA

Chain C2

uL4

Chain e2

eL32

Chain r2

Ribosomal_L28e domain-containing protein