IL_6SGC_084
3D structure
- PDB id
- 6SGC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled on a poly(A) tail
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CCUUGAAG*UGGAG
- Length
- 13 nucleotides
- Bulged bases
- 6SGC|1|54|U|2305
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SGC_084 not in the Motif Atlas
- Homologous match to IL_5TBW_059
- Geometric discrepancy: 0.1366
- The information below is about IL_5TBW_059
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_70923.5
- Basepair signature
- cWW-cWW-tSS-tSH-tHS-cWW-tHS
- Number of instances in this motif group
- 32
Unit IDs
6SGC|1|54|C|2302
6SGC|1|54|C|2303
6SGC|1|54|U|2304
6SGC|1|54|U|2305
6SGC|1|54|G|2306
6SGC|1|54|A|2307
6SGC|1|54|A|2308
6SGC|1|54|G|2309
*
6SGC|1|54|U|2329
6SGC|1|54|G|2330
6SGC|1|54|G|2331
6SGC|1|54|A|2332
6SGC|1|54|G|2333
Current chains
- Chain 54
- 28S ribosomal RNA
Nearby chains
- Chain 84
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain C2
- uL4
- Chain Y2
- Ribosomal protein L26
- Chain e2
- eL32
Coloring options: