IL_6SGC_087
3D structure
- PDB id
- 6SGC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled on a poly(A) tail
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- UGAAC*GAA
- Length
- 8 nucleotides
- Bulged bases
- 6SGC|1|54|A|2428
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SGC_087 not in the Motif Atlas
- Geometric match to IL_7A0S_047
- Geometric discrepancy: 0.1711
- The information below is about IL_7A0S_047
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_83150.2
- Basepair signature
- cWW-tHH-cWW-L-L
- Number of instances in this motif group
- 4
Unit IDs
6SGC|1|54|U|2415
6SGC|1|54|G|2416
6SGC|1|54|A|2417
6SGC|1|54|A|2418
6SGC|1|54|C|2419
*
6SGC|1|54|G|2427
6SGC|1|54|A|2428
6SGC|1|54|A|2429
Current chains
- Chain 54
- 28S ribosomal RNA
Nearby chains
- Chain P2
- uL22
- Chain R2
- eL19
- Chain l2
- eL39
Coloring options: