3D structure

PDB id
6SGC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome stalled on a poly(A) tail
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
UGAAC*GAA
Length
8 nucleotides
Bulged bases
6SGC|1|54|A|2428
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6SGC_087 not in the Motif Atlas
Geometric match to IL_7A0S_047
Geometric discrepancy: 0.1711
The information below is about IL_7A0S_047
Detailed Annotation
C-loop
Broad Annotation
No text annotation
Motif group
IL_83150.2
Basepair signature
cWW-tHH-cWW-L-L
Number of instances in this motif group
4

Unit IDs

6SGC|1|54|U|2415
6SGC|1|54|G|2416
6SGC|1|54|A|2417
6SGC|1|54|A|2418
6SGC|1|54|C|2419
*
6SGC|1|54|G|2427
6SGC|1|54|A|2428
6SGC|1|54|A|2429

Current chains

Chain 54
28S ribosomal RNA

Nearby chains

Chain P2
uL22
Chain R2
eL19
Chain l2
eL39

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.3298 s