IL_6SGC_090

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GAGUGG*CGC

Length

9 nucleotides

Bulged bases

6SGC|1|54|G|2546

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SGC_090 not in the Motif Atlas

Geometric match to IL_4WF9_041

Geometric discrepancy: 0.2801

The information below is about IL_4WF9_041

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

6SGC|1|54|G|2542
6SGC|1|54|A|2543
6SGC|1|54|G|2544
6SGC|1|54|U|2545
6SGC|1|54|G|2546
6SGC|1|54|G|2547
*
6SGC|1|54|C|2772
6SGC|1|54|G|2773
6SGC|1|54|C|2774

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain 84

5.8S ribosomal RNA; 5.8S rRNA

Chain k2

eL38