IL_6SGC_100

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AAG*CCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SGC_100 not in the Motif Atlas

Homologous match to IL_8C3A_081

Geometric discrepancy: 0.0984

The information below is about IL_8C3A_081

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54997.8

Basepair signature

cWW-tWW-cWW

Number of instances in this motif group

8

Unit IDs

6SGC|1|54|A|2844
6SGC|1|54|A|2845
6SGC|1|54|G|2846
*
6SGC|1|54|C|3842
6SGC|1|54|C|3843
6SGC|1|54|U|3844

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain B2

uL3

Chain V2

Ribosomal protein L23

Chain W2

TRASH domain-containing protein