IL_6SGC_105

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GG*CGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SGC_105 not in the Motif Atlas

Homologous match to IL_8C3A_086

Geometric discrepancy: 0.3194

The information below is about IL_8C3A_086

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_74125.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

6SGC|1|54|G|2896
6SGC|1|54|G|2897
*
6SGC|1|54|C|3602
6SGC|1|54|G|3603
6SGC|1|54|A|3604
6SGC|1|54|C|3605

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain A1

Small subunit ribosomal RNA; SSU rRNA

Chain R2

eL19