IL_6SGC_119

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

6SGC|1|54|G|4183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SGC_119 not in the Motif Atlas

Homologous match to IL_8C3A_100

Geometric discrepancy: 0.1088

The information below is about IL_8C3A_100

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38958.10

Basepair signature

cWW-cWW-cWW-tHS

Number of instances in this motif group

9

Unit IDs

6SGC|1|54|U|3927
6SGC|1|54|A|3928
6SGC|1|54|G|3929
*
6SGC|1|54|U|4181
6SGC|1|54|G|4182
6SGC|1|54|G|4183
6SGC|1|54|G|4184

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain A2

Ribosomal protein L8

Chain N2

Ribosomal protein L15

Chain o2

eL42