IL_6SGC_120

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

ACAUGA*UGAUCGU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SGC|1|54|A|3947
6SGC|1|54|C|3948
6SGC|1|54|A|3949
6SGC|1|54|U|3950
6SGC|1|54|G|3951
6SGC|1|54|A|3952
*
6SGC|1|54|U|4060
6SGC|1|54|G|4061
6SGC|1|54|A|4062
6SGC|1|54|U|4063
6SGC|1|54|C|4064
6SGC|1|54|G|4065
6SGC|1|54|U|4066

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain B

Ribosomal protein

Chain i2

60S ribosomal protein L36