IL_6SGC_128

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GACC*GC

Length

6 nucleotides

Bulged bases

6SGC|1|54|C|4349

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SGC_128 not in the Motif Atlas

Geometric match to IL_4V9F_081

Geometric discrepancy: 0.3097

The information below is about IL_4V9F_081

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

6SGC|1|54|G|4347
6SGC|1|54|A|4348
6SGC|1|54|C|4349
6SGC|1|54|C|4350
*
6SGC|1|54|G|4364
6SGC|1|54|C|4365

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain L2

eL13

Chain Q2

eL18

Chain a2

Ribosomal_L18e/L15P domain-containing protein

Chain o2

eL42