IL_6SGC_130
3D structure
- PDB id
- 6SGC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled on a poly(A) tail
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GCU*GAU
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SGC_130 not in the Motif Atlas
- Homologous match to IL_5TBW_103
- Geometric discrepancy: 0.1247
- The information below is about IL_5TBW_103
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
6SGC|1|54|G|4401
6SGC|1|54|C|4402
6SGC|1|54|U|4403
*
6SGC|1|54|G|4440
6SGC|1|54|A|4441
6SGC|1|54|U|4442
Current chains
- Chain 54
- 28S ribosomal RNA
Nearby chains
- Chain I2
- 60S ribosomal protein L10
- Chain b2
- eL29
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