IL_6SGC_140

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

6SGC|1|54|A|4548

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SGC_140 not in the Motif Atlas

Geometric match to IL_7RQB_101

Geometric discrepancy: 0.1653

The information below is about IL_7RQB_101

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_37497.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

118

Unit IDs

6SGC|1|54|C|4537
6SGC|1|54|G|4538
*
6SGC|1|54|C|4547
6SGC|1|54|A|4548
6SGC|1|54|G|4549

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain 23

Transfer RNA; tRNA

Chain A2

Ribosomal protein L8

Chain XX

poly-lysine nascent chain