IL_6SGC_148

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UU*AAUG

Length

6 nucleotides

Bulged bases

6SGC|1|54|A|4656, 6SGC|1|54|U|4657

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SGC_148 not in the Motif Atlas

Homologous match to IL_5TBW_119

Geometric discrepancy: 0.2133

The information below is about IL_5TBW_119

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_24807.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

6SGC|1|54|U|4641
6SGC|1|54|U|4642
*
6SGC|1|54|A|4655
6SGC|1|54|A|4656
6SGC|1|54|U|4657
6SGC|1|54|G|4658

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain R2

eL19

Chain d2

eL31