IL_6SGC_153

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUCCC*GGUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SGC_153 not in the Motif Atlas

Geometric match to IL_7A0S_040

Geometric discrepancy: 0.3004

The information below is about IL_7A0S_040

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

6SGC|1|54|G|4769
6SGC|1|54|U|4770
6SGC|1|54|C|4771
6SGC|1|54|C|4772
6SGC|1|54|C|4773
*
6SGC|1|54|G|4862
6SGC|1|54|G|4863
6SGC|1|54|U|4864
6SGC|1|54|C|4865

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain H2

uL6

Chain O2

uL13