IL_6SGC_161

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UCGUACG*UUGAAA

Length

13 nucleotides

Bulged bases

6SGC|1|54|G|5041

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SGC|1|54|U|5003
6SGC|1|54|C|5004
6SGC|1|54|G|5005
6SGC|1|54|U|5006
6SGC|1|54|A|5007
6SGC|1|54|C|5008
6SGC|1|54|G|5009
*
6SGC|1|54|U|5039
6SGC|1|54|U|5040
6SGC|1|54|G|5041
6SGC|1|54|A|5042
6SGC|1|54|A|5043
6SGC|1|54|A|5044

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain B2

uL3

Chain W2

TRASH domain-containing protein

Chain d2

eL31