IL_6SGC_172

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GCA*UAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SGC_172 not in the Motif Atlas

Geometric match to IL_3MEI_002

Geometric discrepancy: 0.147

The information below is about IL_3MEI_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

6SGC|1|A1|G|23
6SGC|1|A1|C|24
6SGC|1|A1|A|25
*
6SGC|1|A1|U|649
6SGC|1|A1|A|650
6SGC|1|A1|U|651

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain K1

Ribosomal protein S9 (Predicted)

Chain Y1

uS12