IL_6SGC_183

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GACUU*AUGCCGAC

Length

13 nucleotides

Bulged bases

6SGC|1|A1|C|142, 6SGC|1|A1|U|143

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SGC|1|A1|G|130
6SGC|1|A1|A|141
6SGC|1|A1|C|142
6SGC|1|A1|U|143
6SGC|1|A1|U|144
*
6SGC|1|A1|A|175
6SGC|1|A1|U|176
6SGC|1|A1|G|177
6SGC|1|A1|C|178
6SGC|1|A1|C|179
6SGC|1|A1|G|180
6SGC|1|A1|A|181
6SGC|1|A1|C|182

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain H1

40S ribosomal protein S6