IL_6SGC_186

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUGAC*GGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SGC_186 not in the Motif Atlas

Geometric match to IL_4WFL_001

Geometric discrepancy: 0.2011

The information below is about IL_4WFL_001

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6SGC|1|A1|C|188
6SGC|1|A1|U|189
6SGC|1|A1|G|190
6SGC|1|A1|A|191
6SGC|1|A1|C|192
*
6SGC|1|A1|G|207
6SGC|1|A1|G|208
6SGC|1|A1|A|209
6SGC|1|A1|U|210
6SGC|1|A1|G|211

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain J1

40S ribosomal protein S8