IL_6SGC_188

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CAGUG*CUAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SGC|1|A1|C|223
6SGC|1|A1|A|224
6SGC|1|A1|G|225
6SGC|1|A1|U|287
6SGC|1|A1|G|288
*
6SGC|1|A1|C|295
6SGC|1|A1|U|296
6SGC|1|A1|A|297
6SGC|1|A1|G|298

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain F1

40S ribosomal protein S4

Chain H1

40S ribosomal protein S6

Chain J1

40S ribosomal protein S8

Chain M1

Ribosomal protein S11